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Interactive Reactable Table for the Sample Metadata

Source: R/Results_List_reactable.R
summary_list_widget.Rd

Builds a reactable table that reproduces the layout of the metadata Excel sheet (FileName, Condition, Replicate, Coding, # Unique PSMs, # Unique Peptides, # Protein Groups). Black header, rows tinted by condition in light shades and Condition/Coding cells with a strong colour chip (the same scheme used by protein_list_widget() / quant_list_widget()).

Usage

summary_list_widget(
  data = NULL,
  page_size = 16,
  height = 540,
  element_id = "summary_table",
  selection = NULL,
  searchable = FALSE
)

Arguments

data

Data frame or path to a metadata TSV/CSV file. Required; there is no default. It must have the columns R.FileName, R.Condition, R.Replicate, Coding, R.PrecursorsIdentified, R.StrippedSequencesIdentified, R.ProteinGroupsIdentified.

page_size

Page size (default 16, i.e. all the rows).

height

Height in px of the table container (default 540).

element_id

Widget id in the DOM (default "summary_table").

selection

Selection type ("multiple" or NULL).

searchable

Enable the global search box (default FALSE).

Value

An htmltools object (browsable tagList) ready to be rendered.

Examples

if (requireNamespace("jsonlite", quietly = TRUE)) {
  data(nadia_dia)

  # LFQ/TMT metadata lack the identification counts; the widget then shows
  # only FileName/Condition/Replicate/Coding
  w <- summary_list_widget(nadia_dia$metadata)
  print(class(w))
}
#> [1] "shiny.tag.list" "list"