Add a Pattern Profiler run to an existing .nadia file

The clustering is an optional extra step, so it is written separately: this adds it to a file that already holds the analysis, and refuses to create one from scratch.

Usage

nadia_add_pattern_profiler(
  file,
  pattern_profiler,
  overwrite = FALSE,
  verbose = TRUE
)

Arguments

file

Path to an existing .nadia file.

pattern_profiler

Object from pattern_profiler_analysis().

overwrite

Replace a clustering already in the file.

verbose

Print progress.

Value

The path, invisibly.

See also

write_nadia()

Examples

if (requireNamespace("duckdb", quietly = TRUE)) {
    data(nadia_dia)
    res <- process_proteomics(nadia_dia, verbose = FALSE)
    f <- file.path(tempdir(), "pp.nadia")
    write_nadia(f, nadia_dia, res, verbose = FALSE)

    # pp <- pattern_profiler_analysis(res$se_proc, res$DEPs_results)
    # nadia_add_pattern_profiler(f, pp)

    unlink(f)
}